augur.filter module¶
Filter and subsample a sequence set.
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augur.filter.
read_priority_scores
(fname)¶
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augur.filter.
read_vcf
(compressed, input_file)¶
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augur.filter.
register_arguments
(parser)¶
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augur.filter.
run
(args)¶ filter and subsample a set of sequences into an analysis set
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augur.filter.
write_vcf
(compressed, input_file, output_file, dropped_samps)¶